Accurate and efficient spot detection for microscopy data
☆117Feb 5, 2026Updated last month
Alternatives and similar repositories for spotiflow
Users that are interested in spotiflow are comparing it to the libraries listed below
Sorting:
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- ☆12May 6, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last week
- Cell tracking and segmentation software☆174Updated this week
- QuPath extension for Cellsparse☆19May 6, 2025Updated 10 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆47Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Mar 5, 2026Updated 2 weeks ago
- ☆15Jan 20, 2026Updated 2 months ago
- dask empowered fast4dreg☆15Mar 11, 2026Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 11 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 7 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Mar 10, 2026Updated last week
- A napari plugin to view and edit layer metadata☆13Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Mar 3, 2026Updated 2 weeks ago
- ☆28Aug 29, 2024Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆48Feb 25, 2026Updated 3 weeks ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 4 months ago
- Segment Anything for Microscopy☆663Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- ☆29Apr 26, 2024Updated last year
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆234Sep 11, 2023Updated 2 years ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- ☆215Feb 4, 2026Updated last month
- List of openly available dataset generated by our lab☆13Jan 9, 2026Updated 2 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 6 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Collection of useful (to me) python scripts for interacting with napari☆11Aug 14, 2022Updated 3 years ago