Accurate and efficient spot detection for microscopy data
☆141Jun 8, 2026Updated 2 months ago
Alternatives and similar repositories for spotiflow
Users that are interested in spotiflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spotiflow plugin for napari☆19May 19, 2026Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆129Aug 23, 2026Updated last week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Transformer-based cell tracking for live-cell microscopy☆149Aug 7, 2026Updated 3 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆45Jun 7, 2026Updated 2 months ago
- ☆11May 6, 2024Updated 2 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated 3 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell tracking and segmentation software☆206Aug 13, 2026Updated 2 weeks ago
- ☆30Jun 10, 2026Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- Deep-learning library for image restoration.☆150Updated this week
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 2 months ago
- Light microscopy simulation in python.☆55Aug 3, 2026Updated 3 weeks ago
- ☆24Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆132Updated this week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 4 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆54Feb 4, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 6 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- napari plugin for trackastra☆19Jul 16, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆29Aug 21, 2026Updated last week
- Segment images utilizing pre-trained neural networks as feature extractors