Accurate and efficient spot detection for microscopy data
☆124Feb 5, 2026Updated 2 months ago
Alternatives and similar repositories for spotiflow
Users that are interested in spotiflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spotiflow plugin for napari☆17Feb 2, 2026Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 4 months ago
- ☆12May 6, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆122Apr 1, 2026Updated last month
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- Cell tracking and segmentation software☆177Apr 21, 2026Updated last week
- QuPath extension for Cellsparse☆19May 6, 2025Updated 11 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆22Nov 24, 2025Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated 3 weeks ago
- ☆15Apr 1, 2026Updated last month
- dask empowered fast4dreg☆16Mar 11, 2026Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- A napari plugin to analysis point spread functions.☆12Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 8 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Apr 14, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A napari plugin to view and edit layer metadata☆13Updated this week
- ☆28Aug 29, 2024Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 weeks ago
- Create web-based OME-Zarr galleries☆23Apr 21, 2026Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆61Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆52Apr 8, 2026Updated 3 weeks ago
- Segment Anything for Microscopy☆680Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Mar 31, 2026Updated last month
- ☆29Apr 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- ☆219Feb 4, 2026Updated 2 months ago
- List of openly available dataset generated by our lab☆14Apr 1, 2026Updated last month
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆236Sep 11, 2023Updated 2 years ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Apr 24, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Particle tracking by solving linear assignment problem.☆64Apr 1, 2026Updated last month