Accurate and efficient spot detection for microscopy data
☆144Jun 8, 2026Updated 4 months ago
Alternatives and similar repositories for spotiflow
Users that are interested in spotiflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spotiflow plugin for napari☆19May 19, 2026Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated last week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Oct 1, 2026Updated last week
- Transformer-based cell tracking for live-cell microscopy☆155Sep 11, 2026Updated 3 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- ☆11May 6, 2024Updated 2 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Sep 7, 2026Updated last month
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Updated this week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell tracking and segmentation software☆209Aug 13, 2026Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- ☆30Jun 10, 2026Updated 4 months ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Deep-learning library for image restoration.☆154Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 months ago
- Light microscopy simulation in python.☆55Updated this week
- ☆24Aug 26, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 5 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆51Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- napari plugin for trackastra☆19Jul 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Segment images utilizing pre-trained neural networks as feature extractors☆54Jul 3, 2026Updated 3 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆29Aug 21, 2026Updated last month
- Multi-Object Tracking with Integer Linear Equations☆42Jul 21, 2026Updated 2 months ago
- Segment Anything for Microscopy☆735Updated this week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Sep 30, 2026Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆126May 22, 2026Updated 4 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week