Alternatives and similar repositories for qupath-extension-cellsparse

Users that are interested in qupath-extension-cellsparse are comparing it to the libraries listed below

• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 4 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆25Updated 2 years ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆28Updated 3 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated 2 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆26Updated 2 years ago
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆12Updated 3 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated last year
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆60Updated last year
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆17Updated last week
• KerenLab / CellSighter
  ☆35Updated last year
• MIAnalyzer / MIA
  Microsopic Image Analyzer (MIA)
  ☆28Updated 3 months ago
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆16Updated 4 years ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆30Updated 3 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆18Updated last month
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 6 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆22Updated 11 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆14Updated 2 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week
• maweigert / spotipy
  ☆12Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated last month