ksugar / qupath-extension-cellsparseLinks
QuPath extension for Cellsparse
☆19Updated 8 months ago
Alternatives and similar repositories for qupath-extension-cellsparse
Users that are interested in qupath-extension-cellsparse are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆33Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- ☆30Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Raw format to OME-TIFF converter☆56Updated last month
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 5 months ago
- The official QuPath extension for InstanSeg☆29Updated 2 months ago
- ☆36Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- ☆25Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Development of PICASSO plugin for napari☆16Updated 3 years ago
- StarDist plugin for napari☆38Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated this week
- Bio-Formats image file format to raw format converter☆102Updated last month
- Microsopic Image Analyzer (MIA)☆28Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 8 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ☆21Updated 6 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- ☆91Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Command-line client for Fractal☆47Updated this week
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆99Updated last year