labsyspharm / minerva_analysis
☆26Updated last month
Alternatives and similar repositories for minerva_analysis:
Users that are interested in minerva_analysis are comparing it to the libraries listed below
- Piecewise alignment for layers of mosaics☆23Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated last month
- ☆30Updated last year
- Interactive visualization of spatial omics data☆50Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- QuPath extension to interactively align images☆22Updated 2 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 5 months ago
- QuPath extension for Cellsparse☆18Updated 2 months ago
- The official QuPath extension for InstanSeg☆13Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆17Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- The 2023 version of cellPLATO☆14Updated 3 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆14Updated 3 months ago
- Raw format to OME-TIFF converter☆50Updated 3 weeks ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 11 months ago
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- ☆49Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- QuPath extension to run StarDist nucleus detection☆38Updated last month
- comseg☆19Updated last month
- ☆12Updated 3 weeks ago
- Framework for image and flow cytometry analysis☆24Updated last month
- ☆25Updated last month
- Image registration (alignment) software for large microscopy images☆23Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆39Updated 7 months ago
- Integrated pipeline for multiplexed image analysis☆81Updated 3 months ago
- ☆17Updated 11 months ago