Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
β41May 7, 2024Updated 2 years ago
Alternatives and similar repositories for CELESTA
Users that are interested in CELESTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis itemsβ19May 19, 2026Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Jun 25, 2025Updated 11 months ago
- β13Jul 31, 2025Updated 9 months ago
- β38Dec 13, 2023Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.β13Jul 26, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- β14Mar 18, 2022Updated 4 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cβ¦β17Sep 26, 2021Updated 4 years ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)β23Apr 29, 2026Updated 3 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ53May 20, 2022Updated 4 years ago
- Python API and Jupyter widget for Vitessceβ66Updated this week
- CODEX data processing codeβ12Jul 1, 2025Updated 10 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fβ¦β72Nov 4, 2024Updated last year
- Spatial Single-Cell Analysis Toolkitβ111Mar 11, 2026Updated 2 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parametersβ10Dec 13, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- β71Jan 18, 2023Updated 3 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β279Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ32Apr 9, 2026Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics dataβ35Jul 24, 2025Updated 10 months ago
- β20Apr 8, 2025Updated last year
- Piecewise alignment for layers of mosaicsβ57Apr 22, 2026Updated last month
- segmentation of rod-shaped bacteriaβ15Mar 25, 2023Updated 3 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).β23Sep 29, 2025Updated 7 months ago
- UNet script, model, sample dataβ14Feb 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β25Jun 6, 2023Updated 2 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ20Apr 1, 2024Updated 2 years ago
- β23Mar 22, 2023Updated 3 years ago
- Probabilistic topic model for identifying cellular micro-environments.β28Jul 6, 2023Updated 2 years ago
- β34Oct 10, 2025Updated 7 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.β18Aug 8, 2025Updated 9 months ago
- Multiple-choice microscopy pipelineβ150Updated this week
- Gamified image segmentation quality estimationβ19May 1, 2025Updated last year
- Framework for image and flow cytometry analysisβ33Mar 17, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 9 months ago
- Cell clustering and communication network inference for single-cell transcriptomicsβ15Sep 18, 2024Updated last year
- FISH Iterative Cell Typingβ11Mar 24, 2024Updated 2 years ago
- Napari plugin for vollsegβ14Jul 16, 2025Updated 10 months ago
- β36Jun 4, 2024Updated last year
- Histology Topography Cytometry Analysis Toolboxβ69Mar 23, 2026Updated 2 months ago
- Identification of persistent local patterns in spatial omics dataβ17May 6, 2025Updated last year