Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
☆39May 7, 2024Updated last year
Alternatives and similar repositories for CELESTA
Users that are interested in CELESTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 9 months ago
- ☆12Jul 31, 2025Updated 7 months ago
- ☆37Dec 13, 2023Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆14Mar 18, 2022Updated 4 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)☆23Mar 20, 2026Updated last week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- Python API and Jupyter widget for Vitessce☆62Mar 16, 2026Updated last week
- CODEX data processing code☆12Jul 1, 2025Updated 8 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated 2 weeks ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated last month
- ☆71Jan 18, 2023Updated 3 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆267Mar 20, 2026Updated last week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 8 months ago
- ☆19Apr 8, 2025Updated 11 months ago
- Piecewise alignment for layers of mosaics☆42Feb 18, 2026Updated last month
- segmentation of rod-shaped bacteria☆15Mar 25, 2023Updated 3 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 5 months ago
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆24Jun 6, 2023Updated 2 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated last year
- ☆21Mar 22, 2023Updated 3 years ago
- Probabilistic topic model for identifying cellular micro-environments.☆29Jul 6, 2023Updated 2 years ago
- ☆34Oct 10, 2025Updated 5 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 7 months ago
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated last month
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 10 months ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- Identification of persistent local patterns in spatial omics data☆14May 6, 2025Updated 10 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated 8 months ago
- ☆36Jun 4, 2024Updated last year