plevritis-lab / CELESTAView external linksLinks
Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
☆39May 7, 2024Updated last year
Alternatives and similar repositories for CELESTA
Users that are interested in CELESTA are comparing it to the libraries listed below
Sorting:
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 7 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 7 months ago
- ☆14Mar 18, 2022Updated 3 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 6 months ago
- ☆37Dec 13, 2023Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆19Apr 8, 2025Updated 10 months ago
- Piecewise alignment for layers of mosaics☆36Sep 2, 2025Updated 5 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Nov 6, 2025Updated 3 months ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)☆23Feb 4, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆110Jan 6, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆61Feb 5, 2026Updated last week
- ☆33Oct 10, 2025Updated 4 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- ☆24Jun 6, 2023Updated 2 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 6 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 4 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆263Updated this week
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- UNet script, model, sample data☆14Feb 19, 2025Updated 11 months ago
- ☆12Jul 31, 2025Updated 6 months ago
- CODEX data processing code☆12Jul 1, 2025Updated 7 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- Multiple-choice microscopy pipeline☆145Jan 27, 2026Updated 2 weeks ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Feb 5, 2026Updated last week
- Probabilistic topic model for identifying cellular micro-environments.☆28Jul 6, 2023Updated 2 years ago
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated last month
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 2 years ago
- ☆27Oct 23, 2025Updated 3 months ago
- ☆30Oct 4, 2024Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- Identification of persistent local patterns in spatial omics data☆14May 6, 2025Updated 9 months ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆13Sep 30, 2024Updated last year
- ☆17Dec 7, 2023Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago