Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
β40May 7, 2024Updated 2 years ago
Alternatives and similar repositories for CELESTA
Users that are interested in CELESTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis itemsβ19Aug 19, 2026Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Updated this week
- β19Sep 19, 2025Updated 11 months ago
- β13Jul 31, 2025Updated last year
- β38Dec 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evaluating the quality of a cell segmentation method without reference.β13Jul 26, 2025Updated last year
- β14Mar 18, 2022Updated 4 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ19Apr 1, 2024Updated 2 years ago
- β20Apr 8, 2025Updated last year
- β73Jan 18, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cβ¦β16Sep 26, 2021Updated 4 years ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)β23Aug 24, 2026Updated last week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ56May 20, 2022Updated 4 years ago
- Python API and Jupyter widget for Vitessceβ67Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CODEX data processing codeβ13Jul 1, 2025Updated last year
- Code from our publicationsβ20Feb 6, 2026Updated 6 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fβ¦β76Nov 4, 2024Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parametersβ10Dec 13, 2022Updated 3 years ago
- segmentation of rod-shaped bacteriaβ15Mar 25, 2023Updated 3 years ago
- Spatial Single-Cell Analysis Toolkitβ115Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β291Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ36Aug 28, 2026Updated last week
- A Snakemake pipeline for Xenium data analysis.β28Jul 22, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- β12Mar 22, 2023Updated 3 years ago
- UNet script, model, sample dataβ14Feb 19, 2025Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).β24Sep 29, 2025Updated 11 months ago
- β26Jun 6, 2023Updated 3 years ago
- β24Mar 22, 2023Updated 3 years ago
- Probabilistic topic model for identifying cellular micro-environments.β28Jul 6, 2023Updated 3 years ago
- Multiple-choice microscopy pipelineβ156Updated this week
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.β18Aug 8, 2025Updated last year
- Piecewise alignment for layers of mosaicsβ62Aug 8, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gamified image segmentation quality estimationβ20May 1, 2025Updated last year
- Histology Topography Cytometry Analysis Toolboxβ69Mar 23, 2026Updated 5 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated last year
- FISH Iterative Cell Typingβ11Mar 24, 2024Updated 2 years ago
- Framework for image and flow cytometry analysisβ33Mar 17, 2026Updated 5 months ago
- Napari plugin for vollsegβ14Jul 16, 2025Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ67Mar 14, 2024Updated 2 years ago