Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
β41May 7, 2024Updated 2 years ago
Alternatives and similar repositories for CELESTA
Users that are interested in CELESTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis itemsβ19Jul 17, 2026Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Jun 23, 2026Updated last month
- β20Sep 19, 2025Updated 10 months ago
- β13Jul 31, 2025Updated 11 months ago
- β38Dec 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evaluating the quality of a cell segmentation method without reference.β13Jul 26, 2025Updated last year
- β14Mar 18, 2022Updated 4 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ20Apr 1, 2024Updated 2 years ago
- β20Apr 8, 2025Updated last year
- β71Jan 18, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cβ¦β17Sep 26, 2021Updated 4 years ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)β23Updated this week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ57May 20, 2022Updated 4 years ago
- Python API and Jupyter widget for Vitessceβ67Jun 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CODEX data processing codeβ12Jul 1, 2025Updated last year
- Code from our publicationsβ19Feb 6, 2026Updated 5 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fβ¦β75Nov 4, 2024Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parametersβ10Dec 13, 2022Updated 3 years ago
- segmentation of rod-shaped bacteriaβ15Mar 25, 2023Updated 3 years ago
- Spatial Single-Cell Analysis Toolkitβ113Mar 11, 2026Updated 4 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β289Jul 15, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ35Apr 9, 2026Updated 3 months ago
- A Snakemake pipeline for Xenium data analysis.β26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- β12Mar 22, 2023Updated 3 years ago
- UNet script, model, sample dataβ14Feb 19, 2025Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).β23Sep 29, 2025Updated 9 months ago
- β26Jun 6, 2023Updated 3 years ago
- β23Mar 22, 2023Updated 3 years ago
- Probabilistic topic model for identifying cellular micro-environments.β28Jul 6, 2023Updated 3 years ago
- Multiple-choice microscopy pipelineβ155Jun 16, 2026Updated last month
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.β18Aug 8, 2025Updated 11 months ago
- Piecewise alignment for layers of mosaicsβ61Jul 15, 2026Updated last week
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Gamified image segmentation quality estimationβ19May 1, 2025Updated last year
- Histology Topography Cytometry Analysis Toolboxβ69Mar 23, 2026Updated 4 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 11 months ago
- FISH Iterative Cell Typingβ11Mar 24, 2024Updated 2 years ago
- Framework for image and flow cytometry analysisβ33Mar 17, 2026Updated 4 months ago
- Cell clustering and communication network inference for single-cell transcriptomicsβ15Sep 18, 2024Updated last year
- Napari plugin for vollsegβ14Jul 16, 2025Updated last year