labsyspharm / ome-tiff-pyramid-tools
Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
☆14Updated last month
Alternatives and similar repositories for ome-tiff-pyramid-tools:
Users that are interested in ome-tiff-pyramid-tools are comparing it to the libraries listed below
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- ☆23Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Raw format to OME-TIFF converter☆52Updated 2 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- ☆32Updated last year
- QuPath extension for Cellsparse☆18Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- ☆31Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆44Updated this week
- CODEX data processing code☆12Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆27Updated 11 months ago
- ☆71Updated last month
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- ☆18Updated 2 years ago
- computer vision models for single-cell phenotyping☆46Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- ☆35Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- Easily read and write ome-tiff images in python☆27Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago