Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
☆18Aug 8, 2025Updated 8 months ago
Alternatives and similar repositories for ome-tiff-pyramid-tools
Users that are interested in ome-tiff-pyramid-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Raw format to OME-TIFF converter☆56Apr 8, 2026Updated last week
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆19Jun 23, 2025Updated 9 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated 7 months ago
- A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.☆18Apr 1, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Apr 1, 2026Updated 2 weeks ago
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated 2 weeks ago
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- Piecewise alignment for layers of mosaics☆50Feb 18, 2026Updated 2 months ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)☆23Updated this week
- ☆19Mar 31, 2024Updated 2 years ago
- Bio-Formats image file format to raw format converter☆104Apr 3, 2026Updated 2 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Awesome generative spatial omics tools☆23Oct 17, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆34Apr 6, 2026Updated last week
- A tiny Python library for writing multi-channel TIFF stacks.☆30Updated this week
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated last month
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 8 months ago
- Python parser for ISAtab, a biological file format for experimental metadata☆16Nov 24, 2016Updated 9 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- Python API and Jupyter widget for Vitessce☆65Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials☆20Dec 5, 2023Updated 2 years ago
- ☆18Apr 5, 2024Updated 2 years ago
- ☆11Dec 11, 2022Updated 3 years ago
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- A subclass of Mike McCauley's excellent AccelStepper library (http://www.airspayce.com/mikem/arduino/AccelStepper) that uses an encoder t…☆11Mar 9, 2014Updated 12 years ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CODEX data processing code☆12Jul 1, 2025Updated 9 months ago
- ☆13Sep 18, 2018Updated 7 years ago
- CHAMMI: A benchmark for channel-adaptive models in microscopy imaging☆14Oct 23, 2024Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆65Mar 14, 2024Updated 2 years ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 8 months ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Feb 17, 2026Updated 2 months ago
- ☆71Jan 18, 2023Updated 3 years ago