ksugar / samapi
Segment Anything Model API
☆91Updated 7 months ago
Alternatives and similar repositories for samapi:
Users that are interested in samapi are comparing it to the libraries listed below
- QuPath extension for Segment Anything Model (SAM)☆106Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆81Updated 3 weeks ago
- ☆156Updated this week
- Hibou: Foundational Models for Pathology☆69Updated 6 months ago
- ☆64Updated this week
- multimodal whole slide image registration in a graph structure☆84Updated 9 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last week
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆69Updated 9 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated 2 weeks ago
- ☆71Updated last month
- Cloud-based data annotation tools for biological images☆79Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- An open-source digital pathology based rapid image annotation tool☆76Updated 2 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆68Updated 7 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆20Updated last month
- Virtual Alignment of pathoLogy Image Series☆155Updated 4 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆76Updated this week
- ☆25Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- Segment Anything for Histopathology☆25Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆138Updated 2 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆90Updated 2 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆97Updated 3 months ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 10 months ago
- Unsupervised Semantic Segmentation for Pathology☆16Updated 5 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆156Updated this week
- computer vision models for single-cell phenotyping☆45Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 2 months ago