Alternatives and similar repositories for samapi

Users that are interested in samapi are comparing it to the libraries listed below

• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆125Updated 4 months ago
• instanseg / instanseg
  ☆197Updated 3 weeks ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆114Updated 2 weeks ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆126Updated 3 months ago
• Booritas / slideio
  ☆72Updated last week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆96Updated last year
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆26Updated 4 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated this week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆75Updated last year
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆53Updated last month
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆76Updated last week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆126Updated 2 weeks ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 6 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆87Updated last week
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• peng-lab / BaSiCPy
  ☆91Updated 3 weeks ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 5 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆57Updated 4 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 2 weeks ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆30Updated last month
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆81Updated 3 weeks ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 weeks ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆83Updated last week
• jiyuuchc / cellcutter
  ☆19Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆190Updated 5 months ago