ksugar / samapi
Segment Anything Model API
☆76Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for samapi
- QuPath extension for Segment Anything Model (SAM)☆92Updated 2 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆55Updated 3 months ago
- ☆116Updated this week
- ☆66Updated last week
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- computer vision models for single-cell phenotyping☆37Updated this week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆101Updated 2 weeks ago
- Hibou: Foundational Models for Pathology☆54Updated 3 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆70Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆133Updated this week
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 9 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆56Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- ☆60Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆127Updated 2 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆65Updated 2 months ago
- Python package for deep learning based image to image transformation☆49Updated 5 months ago
- A collection of resources on bioimage analysis and related tools and techniques☆13Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆105Updated 4 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆55Updated last week
- Cell tracking and segmentation software☆94Updated this week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- ☆23Updated 2 months ago
- Virtual Alignment of pathoLogy Image Series☆123Updated 3 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆76Updated this week
- Track cells and build cell lineages☆28Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆74Updated 2 months ago