Alternatives and similar repositories for samapi

Users that are interested in samapi are comparing it to the libraries listed below

• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆110Updated this week
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆121Updated 2 months ago
• Booritas / slideio
  ☆72Updated 3 weeks ago
• instanseg / instanseg
  ☆186Updated last week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆122Updated last month
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆182Updated this week
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆80Updated last year
• peng-lab / BaSiCPy
  ☆85Updated 6 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆68Updated last year
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆74Updated 11 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆86Updated this week
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆25Updated 3 months ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆121Updated this week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆178Updated 3 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆77Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆81Updated 3 weeks ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆182Updated this week
• impromptuRong / hd_wsi
  ☆36Updated 6 months ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆107Updated this week
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆79Updated last week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆150Updated 2 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 5 months ago
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆36Updated last week
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆28Updated 5 months ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆74Updated this week