rosalindfranklininstitute / RedLionfish
☆29Updated last year
Alternatives and similar repositories for RedLionfish:
Users that are interested in RedLionfish are comparing it to the libraries listed below
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- ☆15Updated 2 years ago
- ☆47Updated 5 months ago
- Browse your OMERO database from within napari.☆36Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- Command-line client for Fractal☆45Updated last week
- ☆10Updated this week
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- ☆23Updated 6 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- Guides and code for 3D nuclear instance segmentation☆21Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated 2 weeks ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆25Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month