rosalindfranklininstitute / RedLionfish
☆29Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for RedLionfish
- ☆15Updated 2 years ago
- A 3D interactivity toolbox for napari☆32Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆54Updated this week
- Process and analyze surfaces using vedo in napari.☆22Updated 5 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆53Updated last week
- A napari plugin for zarr backed OME-NGFF images☆28Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆19Updated 5 months ago
- ☆43Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- Browse your OMERO database from within napari.☆33Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 2 weeks ago
- native Python dataclasses for the OME data model☆51Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- ilastik plugin for napari☆13Updated 6 months ago
- ☆20Updated last year
- ☆21Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆19Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- ☆17Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆80Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated last week
- ☆12Updated 6 months ago