rosalindfranklininstitute / RedLionfish
☆29Updated 11 months ago
Alternatives and similar repositories for RedLionfish:
Users that are interested in RedLionfish are comparing it to the libraries listed below
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- ☆46Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- ☆15Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆25Updated 3 weeks ago
- Browse your OMERO database from within napari.☆35Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- ☆20Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Command-line client for Fractal☆45Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated last month
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 8 months ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- ☆17Updated 2 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆23Updated 5 months ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago