Alternatives and similar repositories for TissUUmapsCore

Users that are interested in TissUUmapsCore are comparing it to the libraries listed below

• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆60Updated last month
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated 2 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 3 weeks ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆26Updated 4 months ago
• michaellee1 / CellSeg
  ☆24Updated 2 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 3 months ago
• rendeirolab / wsidata
  Efficient data structures and IO for whole slide image analysis
  ☆17Updated 3 weeks ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated last month
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• HiDiHlabs / ssam
  ☆27Updated last year
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆11Updated 2 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆24Updated 2 months ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated 2 months ago
• HelenaLC / SpatialData
  ☆19Updated 3 weeks ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• KerenLab / CellSighter
  ☆36Updated 2 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆100Updated last week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• giovp / spatialdata-sandbox
  ☆13Updated last month
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆48Updated last week
• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆26Updated 3 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆33Updated last week
• nolanlab / REDSEA
  ☆18Updated last year
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆20Updated 3 years ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated 11 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆46Updated 6 months ago
• scverse / spatialdata-io
  ☆85Updated last week