python tools for BigDataViewer
☆22Dec 29, 2024Updated last year
Alternatives and similar repositories for pybdv
Users that are interested in pybdv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Feb 9, 2026Updated last month
- ☆13Apr 27, 2020Updated 5 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- ☆14Oct 24, 2025Updated 4 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 6 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆107Mar 9, 2026Updated 2 weeks ago
- Reference implementation of the Graph Exchange File Format☆37Updated this week
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 2 weeks ago
- Fractal backend☆19Updated this week
- ☆15Feb 5, 2025Updated last year
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- A Board Game to teach co-localization analysis☆14Nov 1, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- ☆21Mar 11, 2026Updated last week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated 2 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆130Updated this week
- ☆19Apr 6, 2022Updated 3 years ago
- A python package for fitting splines.☆23Mar 3, 2026Updated 2 weeks ago
- Scalable Optical Flow-based Image Montaging and Alignment☆91Mar 2, 2026Updated 3 weeks ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated last year
- ilastik plugin for napari☆14Mar 2, 2026Updated 3 weeks ago
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week