manzt / napari-lazy-openslide
Lazily load multiscale whole-slide images with openslide and dask
☆33Updated 2 years ago
Alternatives and similar repositories for napari-lazy-openslide:
Users that are interested in napari-lazy-openslide are comparing it to the libraries listed below
- multimodal whole slide image registration in a graph structure☆81Updated 8 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Bio-Formats image file format to raw format converter☆86Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- ☆31Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Command-line client for Fractal☆45Updated this week
- QuPath extension for Cellsparse☆18Updated 3 months ago
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- ☆34Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ☆24Updated 3 months ago
- ☆25Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- A fully scalable robust image feature extraction library.☆22Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last week
- ☆23Updated 6 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Raw format to OME-TIFF converter☆50Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Easily read and write ome-tiff images in python☆26Updated 10 months ago