A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
☆17Jul 7, 2025Updated 7 months ago
Alternatives and similar repositories for napari-stitcher
Users that are interested in napari-stitcher are comparing it to the libraries listed below
Sorting:
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Generate multifunctional and macro recordable GUIs from Python classes☆45Nov 16, 2025Updated 3 months ago
- A napari plugin to view and edit metadata☆13Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 3 weeks ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Feb 25, 2026Updated last week
- ☆13Apr 27, 2020Updated 5 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- ☆23Oct 22, 2024Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated 11 months ago
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated 2 weeks ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- ☆38Dec 5, 2025Updated 2 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Sep 29, 2024Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 5 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- ☆20Updated this week
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago