SplineDist: Automated Cell Segmentation with Spline Curves
☆70Sep 29, 2024Updated last year
Alternatives and similar repositories for splinedist
Users that are interested in splinedist are comparing it to the libraries listed below
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated this week
- ☆41Feb 13, 2026Updated 3 weeks ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- ilastik plugin for napari☆14Mar 2, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆19Mar 2, 2026Updated last week
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- 3D shape analysis using deep learning☆29Oct 8, 2025Updated 5 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆240Feb 21, 2025Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 3 weeks ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 3 weeks ago
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- ☆22May 1, 2025Updated 10 months ago
- A python package for fitting splines.☆23Updated this week
- Particle tracking by solving linear assignment problem.☆62Mar 1, 2026Updated last week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 3 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Jan 17, 2026Updated last month
- ☆24Sep 13, 2025Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month
- ☆38Dec 5, 2025Updated 3 months ago
- ☆24Aug 27, 2020Updated 5 years ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Feb 25, 2026Updated last week
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆53Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Feb 25, 2026Updated last week
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 3 months ago