uhlmanngroup / splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
☆67Updated 6 months ago
Alternatives and similar repositories for splinedist:
Users that are interested in splinedist are comparing it to the libraries listed below
- StarDist plugin for napari☆38Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- ☆71Updated 3 weeks ago
- ☆31Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆83Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Piecewise alignment for layers of mosaics☆23Updated this week
- ☆23Updated 6 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated last month
- StarDist plugin for ImageJ☆29Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Accurate and efficient spot detection for microscopy data☆72Updated last month
- multimodal whole slide image registration in a graph structure☆83Updated 9 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- ☆25Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago