svi-opensource / libics
Image Cytometry Standard file reading and writing.
☆18Updated 8 months ago
Alternatives and similar repositories for libics:
Users that are interested in libics are comparing it to the libraries listed below
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- OME model (specification, code generator, implementation)☆14Updated 2 months ago
- ☆35Updated last week
- ☆41Updated this week
- ☆14Updated this week
- A python script editor plugin for napari☆11Updated last year
- A fully scalable robust image feature extraction library.☆24Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- SCIFIO ImageIO plugin for ITK☆16Updated last month
- ☆20Updated 3 months ago
- Read Olympus image files (OIF and OIB).☆13Updated this week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated last month
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆51Updated 2 weeks ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated 2 weeks ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- A 3D interactivity toolbox for napari☆34Updated 2 weeks ago
- ☆13Updated 5 years ago
- GPU-accelerated image processing for everyone☆52Updated 10 months ago
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 9 months ago
- A napari plugin for filament analysis☆9Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 8 months ago
- python tools for BigDataViewer☆22Updated 4 months ago
- ☆29Updated last year