svi-opensource / libics
Image Cytometry Standard file reading and writing.
☆16Updated 4 months ago
Alternatives and similar repositories for libics:
Users that are interested in libics are comparing it to the libraries listed below
- PSFj - Know your microscope fluorescence☆21Updated 4 years ago
- ☆20Updated 3 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 5 months ago
- A fully scalable robust image feature extraction library.☆20Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 3 months ago
- imaging demos☆9Updated 2 years ago
- ☆14Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 6 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- AutoPilot library☆14Updated 8 years ago
- A python script editor plugin for napari☆11Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 4 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Easily read and write ome-tiff images in python☆26Updated 8 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- python tools for BigDataViewer☆21Updated 3 weeks ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated this week
- ☆12Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆53Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆20Updated last year
- ☆34Updated this week
- ☆29Updated 9 months ago
- Whole slide image registration through wsireg in napari.☆12Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated 4 months ago