svi-opensource / libics
Image Cytometry Standard file reading and writing.
☆16Updated last week
Related projects: ⓘ
- AutoPilot library☆14Updated 7 years ago
- ☆20Updated 6 months ago
- Fast reconstruction of spatial networks from bioimages.☆24Updated last month
- A fully scalable robust image feature extraction library.☆19Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆27Updated last week
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated 3 weeks ago
- ☆34Updated this week
- python tools for BigDataViewer☆21Updated last year
- ☆19Updated 10 months ago
- PSFj - Know your microscope fluorescence☆19Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆53Updated 2 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 3 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 2 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated 11 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆17Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆57Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 2 years ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆14Updated last year
- ☆28Updated 5 months ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆17Updated 3 months ago
- Whole slide image registration through wsireg in napari.☆11Updated last year
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 2 months ago
- A python script editor plugin for napari☆11Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 2 months ago