Alternatives and similar repositories for libics

Users that are interested in libics are comparing it to the libraries listed below

• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• bigdataprocessor / bigdataprocessor2
  ☆24Updated 4 months ago
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆55Updated this week
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 4 years ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆64Updated 10 months ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆44Updated 5 months ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆23Updated 5 years ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆21Updated 3 weeks ago
• guiwitz / napari_demo
  ☆23Updated 4 years ago
• imaris / ImarisWriter
  ☆38Updated last year
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 10 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆31Updated 2 weeks ago
• ZEISS / libczi
  libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
  ☆62Updated last week
• flevet / SR-Tesseler
  ☆13Updated 5 years ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 3 weeks ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆59Updated 6 months ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆55Updated 2 months ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆61Updated 8 months ago
• InsightSoftwareConsortium / ITKIOOMEZarrNGFF
  ITK IO for images stored in OME-Zarr format.
  ☆11Updated 5 months ago
• mobie / mobie-viewer-fiji
  ☆41Updated this week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆49Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 6 months ago
• cgohlke / oiffile
  Read Olympus image files (OIF and OIB).
  ☆13Updated 3 weeks ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated this week
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆18Updated 3 months ago