tpecot / WholeSlideImageAnalysisWithQuPathLinks
☆27Updated 4 months ago
Alternatives and similar repositories for WholeSlideImageAnalysisWithQuPath
Users that are interested in WholeSlideImageAnalysisWithQuPath are comparing it to the libraries listed below
Sorting:
- The official QuPath extension for InstanSeg☆25Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 3 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆78Updated last month
- QuPath extension to interactively align images☆25Updated last month
- Piecewise alignment for layers of mosaics☆29Updated last week
- QuPath extension for Cellsparse☆19Updated 4 months ago
- QuPath extension to run StarDist nucleus detection☆46Updated 2 months ago
- Lab for quantitative bioimage analysis experiments in Python☆15Updated 7 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆25Updated 2 months ago
- Microsopic Image Analyzer (MIA)☆28Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- Raw format to OME-TIFF converter☆55Updated last month
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆31Updated 2 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆19Updated 2 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆30Updated 3 years ago
- ☆34Updated last year
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- ☆180Updated 2 months ago
- ☆87Updated 5 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆121Updated 2 weeks ago
- version 1 scripts for CODA☆51Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆151Updated last month
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 5 years ago
- ☆51Updated 2 weeks ago
- ☆23Updated 2 years ago
- Bio-Formats image file format to raw format converter☆97Updated last week