☆30Jan 19, 2026Updated last month
Alternatives and similar repositories for WholeSlideImageAnalysisWithQuPath
Users that are interested in WholeSlideImageAnalysisWithQuPath are comparing it to the libraries listed below
Sorting:
- ☆13Mar 26, 2025Updated 11 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated 2 weeks ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- ☆13Jun 27, 2025Updated 8 months ago
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated last month
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆89Feb 5, 2026Updated 3 weeks ago
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 7 months ago
- ☆20Dec 20, 2022Updated 3 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- napari widgets for start-to-finish batch processing☆15Jan 2, 2026Updated last month
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆20Oct 13, 2025Updated 4 months ago
- ☆15Updated this week
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- ☆16May 22, 2025Updated 9 months ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated last year
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- Segment Anything Model API☆108Feb 15, 2026Updated last week
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last week
- Scientific Dataset Quality Control and Data Exploration Tool☆21Feb 8, 2026Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 2 weeks ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- GPU-accelerated Image Processing library for Python☆53Feb 2, 2026Updated 3 weeks ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- ☆13Aug 30, 2024Updated last year
- Awesome Domain Generalization for Computational Pathology☆23Nov 7, 2024Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated 3 weeks ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 2 weeks ago
- A python package for fitting splines.☆23Updated this week
- A whole-slide image reader for TensorFlow☆24Nov 24, 2025Updated 3 months ago
- ☆35Oct 11, 2024Updated last year
- ☆50May 9, 2022Updated 3 years ago
- ☆28Jun 24, 2025Updated 8 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Jun 22, 2025Updated 8 months ago
- ☆66Aug 27, 2025Updated 6 months ago
- Python 3 library for the augmentation & normalization of H&E images☆64Sep 12, 2022Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Jun 14, 2024Updated last year