tpecot / WholeSlideImageAnalysisWithQuPath
☆20Updated 3 weeks ago
Related projects: ⓘ
- ☆15Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆43Updated last month
- GPU-accelerated image processing in QuPath☆14Updated 2 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆60Updated last week
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Piecewise alignment for layers of mosaics☆18Updated this week
- ☆28Updated 3 years ago
- Microsopic Image Analyzer (MIA)☆29Updated 5 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆17Updated 3 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆21Updated 3 weeks ago
- QuPath extension to interactively align images☆19Updated last month
- QuPath extension for Cellsparse☆14Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 3 months ago
- ☆19Updated 5 months ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆16Updated 4 years ago
- ☆29Updated 2 years ago
- QuPath extension to run StarDist nucleus detection☆33Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- StarDist plugin for napari☆35Updated 3 weeks ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated last year
- ☆28Updated 9 months ago
- ☆12Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated last week
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆22Updated 2 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- multimodal whole slide image registration in a graph structure☆76Updated 2 months ago
- ☆15Updated 3 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- version 1 scripts for CODA☆31Updated 4 months ago