☆30Jan 19, 2026Updated 2 months ago
Alternatives and similar repositories for WholeSlideImageAnalysisWithQuPath
Users that are interested in WholeSlideImageAnalysisWithQuPath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Mar 26, 2025Updated last year
- Rust extension module for FIJI-like colormapping and channel blending☆19Mar 31, 2026Updated last week
- ☆13Jun 27, 2025Updated 9 months ago
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆89Feb 5, 2026Updated 2 months ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆21Oct 13, 2025Updated 5 months ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- ☆15Updated this week
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 2 months ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Segment Anything Model API☆110Feb 15, 2026Updated last month
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆21Apr 1, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆55Mar 31, 2026Updated last week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- ☆16May 22, 2025Updated 10 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- A python package for fitting splines.☆23Mar 3, 2026Updated last month
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Jun 22, 2025Updated 9 months ago
- ☆20Dec 20, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Friendly base POM for all SciJava-based software☆28Mar 19, 2026Updated 3 weeks ago
- ImageJ macros and scripts written at the imaging facility MRI☆38Mar 27, 2026Updated last week
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Mar 31, 2026Updated last week
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆108Apr 2, 2026Updated last week
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆33Jun 21, 2024Updated last year
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated last year
- Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021☆14Nov 3, 2021Updated 4 years ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago