HenriquesLab / DL4MicEverywhereLinks
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
☆80Updated this week
Alternatives and similar repositories for DL4MicEverywhere
Users that are interested in DL4MicEverywhere are comparing it to the libraries listed below
Sorting:
- ☆87Updated 5 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- ☆51Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Accurate and efficient spot detection for microscopy data☆95Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Course and exercises on deep learning for microscopy image analysis☆19Updated 2 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆73Updated last month
- Automated mitochondrial segmentation and tracking.☆33Updated 3 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆98Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- Cell tracking and segmentation software☆127Updated last week
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆82Updated this week
- ☆23Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- StarDist plugin for napari☆40Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ☆32Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year