An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow
☆14Apr 30, 2021Updated 4 years ago
Alternatives and similar repositories for tf-WSI-dataset-utils
Users that are interested in tf-WSI-dataset-utils are comparing it to the libraries listed below
Sorting:
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Apr 14, 2025Updated 11 months ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- ☆21Dec 30, 2025Updated 2 months ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 4 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Sep 2, 2020Updated 5 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- base on MIL method☆13Jul 25, 2024Updated last year
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 5 years ago
- WSICS☆30Apr 19, 2019Updated 6 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Nov 19, 2021Updated 4 years ago
- Whole Slide Image (WSI) Viewer written in Python (using Qt and OpenSlide)☆10Feb 12, 2020Updated 6 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- Official repository for RADTorch - The Medical Imaging Machine Learning Framework☆22Aug 29, 2024Updated last year
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated last year
- Framework for registration of sequential digitized histology slices☆28Mar 24, 2022Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29May 21, 2024Updated last year
- ☆46Jan 10, 2022Updated 4 years ago
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 5 months ago
- Sub-cortical brain tissue segmentation using CNN☆14Sep 28, 2017Updated 8 years ago
- Python package to simplify access to the data available in NCI Imaging Data Commons☆20Updated this week
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 8 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- HIPPO 🦛 is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing o…☆17Jan 15, 2025Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Jan 25, 2024Updated 2 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆52Apr 2, 2023Updated 2 years ago
- Pytorch implementation of Self Attentive Adversarial Stain Normalization (SAASN).☆14Feb 13, 2023Updated 3 years ago
- Divide-and-Rule: Self-Supervised Learning for Survival Analysis in Colorectal Cancer☆21May 14, 2024Updated last year
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- GPU-accelerated stain normalization command line tool☆24Oct 19, 2023Updated 2 years ago
- Library for Digital Pathology Image Processing☆446Updated this week
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Jan 29, 2018Updated 8 years ago