Alternatives and similar repositories for qupath-groovy-python-runner

Users that are interested in qupath-groovy-python-runner are comparing it to the libraries listed below

• Kapoorlabs-CAPED / vollseg-napari
  Napari plugin for vollseg
  ☆15Updated 4 months ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆39Updated 3 weeks ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆83Updated this week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• BIOP / ijp-kheops
  ☆20Updated last month
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 6 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆30Updated 3 weeks ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆12Updated 3 months ago
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆20Updated 3 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆30Updated 6 months ago
• NEUBIAS / Defragmentation_TrainingSchool_EOSC-Life_2022
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…
  ☆15Updated 2 years ago
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆16Updated 4 years ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆25Updated 11 months ago
• MultimodalImagingCenter / MiC
  MiC is an ImageJ plugin to compare segmentation masks
  ☆19Updated 5 months ago
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆28Updated last month
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated last month
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• bigdataviewer / bigdataviewer-playground
  ☆20Updated 3 weeks ago
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated last year
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆77Updated 2 weeks ago
• GuignardLab / tapenade
  ☆13Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated 2 months ago
• BiAPoL / Quantitative_Bio_Image_Analysis_with_Python_2022
  This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
  ☆16Updated 3 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆60Updated last year