BIOP / qupath-groovy-python-runnerLinks
A proof of concept to run python segmentations and recovering the results within QuPath
☆19Updated 4 years ago
Alternatives and similar repositories for qupath-groovy-python-runner
Users that are interested in qupath-groovy-python-runner are comparing it to the libraries listed below
Sorting:
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆75Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- Napari plugin for vollseg☆14Updated 3 weeks ago
- ☆19Updated last week
- ☆26Updated 3 months ago
- StarDist plugin for ImageJ☆31Updated 3 years ago
- Piecewise alignment for layers of mosaics☆28Updated last month
- ☆31Updated 4 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 6 months ago
- ☆20Updated last month
- QuPath extension for Cellsparse☆19Updated 3 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated last month
- multimodal whole slide image registration in a graph structure☆90Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- The official QuPath extension for InstanSeg☆24Updated 3 weeks ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 weeks ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 10 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 7 months ago
- ImgLib2 RealTransform brought to QuPath☆25Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆17Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- ☆14Updated last week
- QuPath extension for Segment Anything Model (SAM)☆114Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆141Updated last month
- Microsopic Image Analyzer (MIA)☆28Updated last year