BIOP / qupath-groovy-python-runner
A proof of concept to run python segmentations and recovering the results within QuPath
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for qupath-groovy-python-runner
- Napari plugin for vollseg☆13Updated 5 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆65Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆32Updated last month
- ☆23Updated 2 months ago
- Piecewise alignment for layers of mosaics☆20Updated 2 weeks ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- ImgLib2 RealTransform brought to QuPath☆20Updated 2 weeks ago
- ☆28Updated 3 years ago
- ☆13Updated 2 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- QuPath extension for Cellsparse☆15Updated 4 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- A collection of demonstration materials for MorphoLibJ.☆11Updated last year
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 3 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- ☆10Updated 9 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- ImageJ plugins to run ilastik workflows☆23Updated 4 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆23Updated last month
- Raw format to OME-TIFF converter☆49Updated this week
- ☆19Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Microsopic Image Analyzer (MIA)☆29Updated 7 months ago
- MethodsJ2☆14Updated 2 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆68Updated 2 weeks ago