BIOP / qupath-groovy-python-runnerLinks
A proof of concept to run python segmentations and recovering the results within QuPath
☆19Updated 4 years ago
Alternatives and similar repositories for qupath-groovy-python-runner
Users that are interested in qupath-groovy-python-runner are comparing it to the libraries listed below
Sorting:
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated 3 weeks ago
- Napari plugin for vollseg☆14Updated 5 months ago
- ☆30Updated 2 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆84Updated last month
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆20Updated this week
- ☆20Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- GPU-accelerated image processing in QuPath☆16Updated 4 years ago
- QuPath extension for Cellsparse☆19Updated 8 months ago
- ☆21Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- Piecewise alignment for layers of mosaics☆31Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- Microsopic Image Analyzer (MIA)☆28Updated 4 months ago
- 3D shape analysis using deep learning☆28Updated 3 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 7 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- The official QuPath extension for InstanSeg☆29Updated 2 months ago
- ☆25Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 3 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago