Alternatives and similar repositories for qupath-groovy-python-runner

Users that are interested in qupath-groovy-python-runner are comparing it to the libraries listed below

• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆69Updated 3 weeks ago
• BIOP / qupath-extension-warpy
  ImgLib2 RealTransform brought to QuPath
  ☆24Updated last month
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated last week
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆26Updated 3 weeks ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated 3 weeks ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated last week
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• Kapoorlabs-CAPED / vollseg-napari
  Napari plugin for vollseg
  ☆13Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆23Updated this week
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆15Updated 3 years ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆17Updated 2 weeks ago
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆25Updated 2 years ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆85Updated 11 months ago
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆11Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 10 months ago
• qupath / qubalab
  Lab for quantitative bioimage analysis experiments in Python
  ☆13Updated 4 months ago
• BIOP / ijp-kheops
  ☆16Updated 3 months ago
• KerenLab / CellSighter
  ☆33Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆54Updated 2 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆53Updated last week
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• pmascalchi / ImageJ_Export-LIF-as-Individual-Images
  ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
  ☆11Updated 3 years ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 6 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 8 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last month
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated last month