AndrewNorgan / wsiLinks
Open source whole slide image preparation and viewing pipeline
☆13Updated 5 years ago
Alternatives and similar repositories for wsi
Users that are interested in wsi are comparing it to the libraries listed below
Sorting:
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Trained models for use with QuPath☆15Updated 4 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Updated 7 years ago
- A whole-slide image reader for TensorFlow☆24Updated last month
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆86Updated this week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…☆20Updated 2 weeks ago
- Suspicious Regions-Based Whole Slide Image Analysis☆10Updated 2 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 5 years ago
- Template to help create a new QuPath extension☆21Updated 2 months ago
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆16Updated 2 years ago
- ☆16Updated 9 months ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Updated 2 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆26Updated 4 months ago
- Full package for applying deep learning to virtual slides.☆71Updated 7 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Updated 7 months ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆51Updated 2 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 5 years ago
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆11Updated 6 months ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆79Updated 3 months ago
- A Girder plugin for pathology image annotations and analysis.☆75Updated 2 weeks ago
- ☆24Updated 2 years ago
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆28Updated 3 months ago
- Intelligent data partitioning using quality control metrics☆19Updated 4 months ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆12Updated 2 years ago