Microsopic Image Analyzer (MIA)
☆28Aug 19, 2025Updated 6 months ago
Alternatives and similar repositories for MIA
Users that are interested in MIA are comparing it to the libraries listed below
Sorting:
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- ☆13Apr 27, 2020Updated 5 years ago
- ☆13Mar 10, 2020Updated 5 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- ☆15Jul 29, 2022Updated 3 years ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- ☆20Feb 19, 2026Updated last week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 10 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated 2 weeks ago
- Lectures, labs and all documents associated with 3D Morphometrics workshop at FHL (Summer 2019)☆14Feb 6, 2020Updated 6 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated last year
- ☆23Mar 26, 2021Updated 4 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Updated this week
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 6 years ago
- ☆24Sep 13, 2025Updated 5 months ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- ☆10Mar 15, 2024Updated last year
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- A napari plugin to view and edit metadata☆13Updated this week
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- ☆13Aug 16, 2024Updated last year
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- napari widgets for start-to-finish batch processing☆15Jan 2, 2026Updated last month
- Microsnoop: A generalist tool for microscopy image representation☆11Feb 27, 2025Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated 3 weeks ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Feb 20, 2026Updated last week
- 1d plotting in napari-based canvas.☆25Updated this week
- ☆24Aug 27, 2020Updated 5 years ago