MIAnalyzer / MIA
Microsopic Image Analyzer (MIA)
☆29Updated 5 months ago
Related projects: ⓘ
- ☆20Updated 3 weeks ago
- QuPath extension for Cellsparse☆14Updated 2 months ago
- GPU-accelerated image processing in QuPath☆14Updated 2 years ago
- MethodsJ2☆14Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated last week
- StarDist plugin for napari☆35Updated 3 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 10 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆19Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆16Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆22Updated 4 months ago
- QuPath extension to interactively align images☆19Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆30Updated 3 weeks ago
- ☆28Updated 9 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆22Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆20Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 3 months ago
- ☆29Updated 2 years ago
- Piecewise alignment for layers of mosaics☆18Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- ☆20Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆12Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆51Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆43Updated last month
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆19Updated last week
- ☆20Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆37Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆37Updated last month