guiwitz / napari-annotation-projectLinks
A minimalistic napari plugin to create and save regions of interest and annotations on series of images
☆16Updated 6 months ago
Alternatives and similar repositories for napari-annotation-project
Users that are interested in napari-annotation-project are comparing it to the libraries listed below
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 10 months ago
- python tools for BigDataViewer☆22Updated 9 months ago
- ☆19Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- ☆13Updated 5 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 2 years ago
- ☆13Updated 5 years ago
- ☆15Updated 2 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- dask empowered fast4dreg☆14Updated 10 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- ilastik plugin for napari☆14Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 6 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- StarDist plugin for napari☆39Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆24Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 5 months ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago