We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolutionary genomics and functional analyses discover new late blight-resistant genes, presenting potential for resistance introgression and/or stacking in hybrid potato breeding.
☆19Oct 31, 2025Updated 4 months ago
Alternatives and similar repositories for PotatoNLRome
Users that are interested in PotatoNLRome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆29Sep 13, 2023Updated 2 years ago
- NLR annotation tool☆35Mar 6, 2024Updated 2 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10Jan 27, 2025Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Mar 23, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- ☆18Jun 14, 2025Updated 9 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆68Oct 23, 2025Updated 5 months ago
- ☆16Mar 17, 2023Updated 3 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Jul 29, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆17Jan 21, 2026Updated 2 months ago
- ☆14Jul 27, 2019Updated 6 years ago
- ☆21Dec 13, 2024Updated last year
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Scripting analyses of genomes in Ensembl Plants☆42Jan 1, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆15Jan 2, 2018Updated 8 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆19Jul 26, 2017Updated 8 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago