The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome assemblies.
☆11Jul 27, 2023Updated 2 years ago
Alternatives and similar repositories for HRP
Users that are interested in HRP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Mar 16, 2026Updated last week
- NLR annotation tool☆35Mar 6, 2024Updated 2 years ago
- ☆21May 31, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆19Oct 31, 2025Updated 4 months ago
- Programs used in the lab for various tasks☆14Mar 5, 2023Updated 3 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 9 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆14Oct 29, 2023Updated 2 years ago
- ☆18Jun 14, 2025Updated 9 months ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 4 years ago
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆47Apr 28, 2025Updated 10 months ago
- ☆12Mar 16, 2024Updated 2 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- 本仓库的代码用于雷达/通信信号波形的仿真与时频分析☆26Oct 19, 2024Updated last year
- Whole genome visualization and comparative genomics in R☆21Feb 18, 2025Updated last year
- A command line application for downloading scientific papers.☆23Oct 29, 2025Updated 4 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- ☆29Aug 7, 2025Updated 7 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆14Sep 16, 2025Updated 6 months ago
- convert nucleic sequence in protein sequence☆19Feb 2, 2023Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- My work on building a deep neural network for fast and accurate protein protein interaction prediction☆11Mar 13, 2024Updated 2 years ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆35Feb 26, 2026Updated 3 weeks ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- Workflow for Building Microsynteny Networks☆60Jul 30, 2022Updated 3 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆21Jan 19, 2026Updated 2 months ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26May 7, 2020Updated 5 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- ☆16Aug 17, 2023Updated 2 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated 10 months ago