AndolfoG / HRPLinks
The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome assemblies.
☆11Updated 2 years ago
Alternatives and similar repositories for HRP
Users that are interested in HRP are comparing it to the libraries listed below
Sorting:
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆13Updated 2 years ago
- ☆17Updated last year
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆24Updated 3 months ago
- ☆12Updated 6 years ago
- ☆24Updated 5 months ago
- collection of bioinformatic scripts☆31Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆21Updated 3 weeks ago
- ☆12Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- ☆15Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- ☆24Updated 2 years ago
- Draw genetic map (linkage map) in R☆12Updated 7 years ago
- ☆20Updated 9 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 3 weeks ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- ☆23Updated 7 months ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆27Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- visual analysis of your VCF files☆36Updated 2 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆17Updated 3 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆35Updated 8 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Updated last year