Fast implementation of the neighbour-joining phylogenetic inference method
☆23May 23, 2020Updated 6 years ago
Alternatives and similar repositories for quicktree
Users that are interested in quicktree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- ☆11Sep 16, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆20Jul 22, 2026Updated 2 months ago
- SV genotyper for long reads with a variation graph☆16Sep 28, 2026Updated last week
- ☆11Aug 2, 2025Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆76Aug 26, 2026Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆72Oct 3, 2026Updated last week
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated 3 weeks ago
- k-mer similarity analysis pipeline☆24Updated this week
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- Fast and accurate set similarity estimation via containment min hash☆41Jul 19, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 8 months ago
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- ☆42May 19, 2025Updated last year
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Aug 25, 2026Updated last month
- Create a tree using Mash distances☆191Oct 24, 2023Updated 2 years ago
- ☆22Jan 11, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- ☆21Jul 30, 2026Updated 2 months ago
- ☆63Sep 15, 2025Updated last year
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- ☆10Sep 28, 2026Updated last week
- ☆83Jun 2, 2023Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago