cerebis / qc3CLinks
Reference-free quality assessment for Hi-C sequencing data
☆13Updated last year
Alternatives and similar repositories for qc3C
Users that are interested in qc3C are comparing it to the libraries listed below
Sorting:
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆40Updated 5 months ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆33Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 7 months ago
- A box of genomics tools☆21Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Visualising discordant reads☆15Updated 10 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆31Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated this week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆31Updated 5 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 5 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 7 months ago