cerebis / qc3C
Reference-free quality assessment for Hi-C sequencing data
☆13Updated 9 months ago
Alternatives and similar repositories for qc3C:
Users that are interested in qc3C are comparing it to the libraries listed below
- Improved Phased Assembler☆28Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆28Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated this week
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- ☆32Updated 4 years ago
- ☆20Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆30Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆14Updated 10 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago