Cyclic DNA Sequence Aligner
☆11Apr 15, 2020Updated 6 years ago
Alternatives and similar repositories for CSA
Users that are interested in CSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated last year
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆33May 2, 2025Updated last year
- Source code for MutPred2.0☆16Mar 27, 2025Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- ☆15Jul 21, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 3 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 10 months ago
- Interpretable, protein structure-based prediction of missense variant deleteriousness.☆23Aug 6, 2025Updated last year
- ☆13Jul 16, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R Studio dark theme, inspired by VS Code.☆16Jan 19, 2023Updated 3 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 6 years ago
- Accessing AlphaMissense Data Resources in R☆13Nov 26, 2025Updated 8 months ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 2 months ago
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- an innovative strategy for missense mutant protein structures prediction based on AlphaFold2 and Molecular Dynamics Simulation☆13May 21, 2024Updated 2 years ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆26Dec 6, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Jun 10, 2026Updated 2 months ago
- ☆49Mar 19, 2023Updated 3 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 8 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Jul 1, 2026Updated last month
- A parallel wrapper for LTR_FINDER☆56Mar 8, 2026Updated 5 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- 🍶 Genome assembly with short sequence reads☆26Jun 4, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- IMGT segment library converted to RepSeq.IO JSON format☆14Mar 21, 2023Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆26Jul 15, 2026Updated 3 weeks ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆23May 23, 2020Updated 6 years ago