fjdf / CSALinks
Cyclic DNA Sequence Aligner
☆10Updated 5 years ago
Alternatives and similar repositories for CSA
Users that are interested in CSA are comparing it to the libraries listed below
Sorting:
- Diploid genome assembly analysis tools☆14Updated last year
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Updated 3 years ago
- AncestralClust☆11Updated 4 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 4 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 7 months ago
- chloroplast genome assembly using long reads data☆13Updated 4 months ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- Sorting and subsampling phylogenomic datasets☆26Updated 7 months ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆16Updated last month
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- ☆33Updated last year
- Mitochondrial Genome Assembly☆16Updated last year
- ☆22Updated 11 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆16Updated last year
- ☆15Updated last year
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Detecting NUMTs from WGS☆13Updated last year