fjdf / CSALinks
Cyclic DNA Sequence Aligner
☆10Updated 5 years ago
Alternatives and similar repositories for CSA
Users that are interested in CSA are comparing it to the libraries listed below
Sorting:
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- chloroplast genome assembly using long reads data☆13Updated 2 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆30Updated 3 weeks ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 3 months ago
- ☆14Updated 11 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- ☆11Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆14Updated last year
- ☆33Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 5 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated 2 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- AncestralClust☆11Updated 2 months ago
- MCMCtree tutorials☆24Updated last year
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- Mitochondrial Genome Assembly☆16Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last week
- ☆16Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 3 months ago
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Updated 5 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month