niemasd / ViralMSALinks
Reference-guided multiple sequence alignment of viral genomes
☆69Updated last month
Alternatives and similar repositories for ViralMSA
Users that are interested in ViralMSA are comparing it to the libraries listed below
Sorting:
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆53Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 2 weeks ago
- Influenza genome analysis Nextflow workflow☆26Updated 3 months ago
- A package to annotate protein sequences☆59Updated 4 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 8 months ago
- Simple bacterial assembly and annotation pipeline☆75Updated this week
- orthology assignment using phylogenetic and network analyses☆45Updated 4 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆39Updated last month
- ☆50Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 7 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated last month
- Add biological annotations to variants in a given VCF file.☆32Updated 3 years ago
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago