niemasd / ViralMSALinks
Reference-guided multiple sequence alignment of viral genomes
☆70Updated last month
Alternatives and similar repositories for ViralMSA
Users that are interested in ViralMSA are comparing it to the libraries listed below
Sorting:
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated 3 weeks ago
- Protein Alignment and Detection Interface☆60Updated last year
- A package to annotate protein sequences☆60Updated 10 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Python bindings for the TaxonKit library☆41Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- ☆43Updated last year
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆57Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Updated last year
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- ☆28Updated 5 years ago
- ☆52Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Find Unique genomic Regions☆32Updated 2 months ago