pachterlab / sircel
Identify cell barcodes from single-cell genomics sequencing experiments
☆43Updated 3 years ago
Alternatives and similar repositories for sircel:
Users that are interested in sircel are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last month
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- IDR☆31Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- ☆33Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- simplified cellranger for long-read data☆18Updated last week
- BAGEL software☆27Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆28Updated 6 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago