pachterlab / sircelLinks
Identify cell barcodes from single-cell genomics sequencing experiments
☆43Updated 3 years ago
Alternatives and similar repositories for sircel
Users that are interested in sircel are comparing it to the libraries listed below
Sorting:
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- IDR☆31Updated 2 years ago
- BAGEL software☆27Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆34Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ATAC-seq lab for BIOINF545☆25Updated 4 months ago
- ☆22Updated 7 years ago