pachterlab / sircelLinks
Identify cell barcodes from single-cell genomics sequencing experiments
☆43Updated 3 years ago
Alternatives and similar repositories for sircel
Users that are interested in sircel are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- IDR☆31Updated 2 years ago
- simplified cellranger for long-read data☆19Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 weeks ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 2 months ago
- chia pet analysis software☆25Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- BAGEL software☆27Updated last year
- ☆34Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Useful tools for working with Salmon output☆38Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago