JEFworks / ligerLinks
Lightweight Iterative Gene set Enrichment in R
☆56Updated 8 months ago
Alternatives and similar repositories for liger
Users that are interested in liger are comparing it to the libraries listed below
Sorting:
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- ☆53Updated 3 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Toolbox with R scripts☆38Updated 6 years ago
- ☆38Updated 2 years ago
- ☆55Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆34Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- Explore and share your scRNAseq clustering results☆50Updated last year
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- An R interface to the MEME Suite☆50Updated 7 months ago
- ☆41Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆40Updated 7 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago