JEFworks / ligerLinks
Lightweight Iterative Gene set Enrichment in R
☆57Updated last year
Alternatives and similar repositories for liger
Users that are interested in liger are comparing it to the libraries listed below
Sorting:
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Identify and correct invalid gene symbols☆60Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- ☆41Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- ☆55Updated 5 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 5 months ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 11 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last week
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ☆41Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- ☆55Updated 10 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 3 weeks ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- An R interface to the MEME Suite☆54Updated 6 months ago
- ☆29Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 9 months ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year