JEFworks / liger
Lightweight Iterative Gene set Enrichment in R
☆56Updated 6 months ago
Alternatives and similar repositories for liger:
Users that are interested in liger are comparing it to the libraries listed below
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆53Updated 2 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- ☆54Updated 4 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 4 months ago
- ☆38Updated 2 years ago
- ☆40Updated 7 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated last month
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- R package wrapping bedtools☆39Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Statistical power studies for multi-omics experiments.☆31Updated 3 months ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year