JEFworks / liger
Lightweight Iterative Gene set Enrichment in R
☆57Updated last month
Related projects ⓘ
Alternatives and complementary repositories for liger
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- Identify and correct invalid gene symbols☆55Updated last week
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year
- ☆53Updated last month
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆53Updated 3 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Toolbox with R scripts☆38Updated 6 years ago
- An R interface to the MEME Suite☆46Updated last month
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- ☆37Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated last month
- ☆33Updated 5 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Normalization for single cell RNA-seq data☆47Updated last year