Java tools for analyzing Drop-seq data
☆137Oct 28, 2026Updated this week
Alternatives and similar repositories for Drop-seq
Users that are interested in Drop-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A SingleCell RNASeq pre-processing snakemake workflow☆149Jan 11, 2023Updated 3 years ago
- ☆12Aug 24, 2019Updated 7 years ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 9 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Oct 4, 2026Updated 3 weeks ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 6 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell analysis in Python. Scales to >100M cells.☆2,607Updated this week
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 7 months ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 8 years ago
- Single-cell Hierarchical Poisson Factorization☆76Feb 14, 2026Updated 8 months ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 4 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- ☆23Feb 7, 2020Updated 6 years ago
- ☆50Mar 1, 2018Updated 8 years ago
- Clean up single-cell data☆11Dec 20, 2022Updated 3 years ago
- Dataset distribution for Seurat☆162Mar 6, 2025Updated last year
- Analysis of single cell RNA-seq data course☆686Apr 11, 2022Updated 4 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Tools for working with BUS files☆102May 27, 2025Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Near-optimal RNA-Seq quantification☆775Jul 12, 2026Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- A software package for analyzing snapshots of developmental processes☆166Sep 15, 2022Updated 4 years ago