Java tools for analyzing Drop-seq data
☆136Oct 9, 2026Updated this week
Alternatives and similar repositories for Drop-seq
Users that are interested in Drop-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A SingleCell RNASeq pre-processing snakemake workflow☆149Jan 11, 2023Updated 3 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆548Oct 4, 2026Updated last week
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 5 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆76Feb 14, 2026Updated 7 months ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 9 years ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 8 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- Analytical R Tools for Mass Spectrometry☆13Oct 30, 2025Updated 11 months ago
- Near-optimal RNA-Seq quantification☆773Jul 12, 2026Updated 3 months ago
- ☆18Jun 13, 2019Updated 7 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- ☆50Mar 1, 2018Updated 8 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,585Updated this week
- A software package for analyzing snapshots of developmental processes☆166Sep 15, 2022Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆768Sep 27, 2026Updated 2 weeks ago
- an easy deindex tool for illumina multiple barcodes sequencing☆12Jul 30, 2015Updated 11 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆247May 23, 2020Updated 6 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 6 years ago
- Analysis code and results for dreamlet☆12Apr 16, 2026Updated 5 months ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆477Apr 11, 2026Updated 6 months ago
- RNA-seq aligner☆2,263Mar 18, 2025Updated last year