broadinstitute / Drop-seq
Java tools for analyzing Drop-seq data
☆125Updated this week
Alternatives and similar repositories for Drop-seq:
Users that are interested in Drop-seq are comparing it to the libraries listed below
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Tools for single-cell data processing☆123Updated 10 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆143Updated 10 months ago
- ☆105Updated 11 months ago
- Detecting sites of genomic enrichment☆189Updated last year
- ☆228Updated 9 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- ☆118Updated 6 years ago
- ☆116Updated last year
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- Clustering scRNAseq by genotypes☆177Updated 5 months ago
- Cell types enrichment analysis☆194Updated 10 months ago
- Interactively analyze single cell genomic data☆182Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆268Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- ☆61Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆126Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 2 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆102Updated 2 weeks ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆91Updated 3 weeks ago
- Automated cell type classification☆111Updated 3 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago