a pipeline for single cell RNA-seq data analysis
☆67Dec 11, 2023Updated 2 years ago
Alternatives and similar repositories for scPipe
Users that are interested in scPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Dec 11, 2018Updated 7 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 5 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 6 years ago
- R package for benchmarking single cell analysis methods☆34Oct 4, 2023Updated 3 years ago
- ☆21Apr 20, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Glimma R package☆50Sep 2, 2024Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- ☆11Sep 5, 2018Updated 8 years ago
- ☆16Jul 9, 2024Updated 2 years ago
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆76Jul 16, 2026Updated 3 months ago
- ☆20Mar 28, 2017Updated 9 years ago
- Fast spliced aligner with low memory requirements☆40Sep 8, 2015Updated 11 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆38Jul 26, 2016Updated 10 years ago
- Clone of the Bioconductor repository for the scater package.☆94Aug 6, 2026Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 6 months ago
- A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake …☆17Aug 27, 2025Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- interactive plots for differential expression analysis☆35Apr 30, 2026Updated 5 months ago
- Single-cell RNA-seq Gene Expression Recovery☆117Nov 28, 2024Updated last year
- ☆15Jun 3, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- Accurate and robust imputation of scRNA-seq data☆103Aug 21, 2019Updated 7 years ago
- Query the gene models of a given organism/assembly☆26Aug 27, 2026Updated last month