Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)
☆16May 21, 2014Updated 12 years ago
Alternatives and similar repositories for biomartpy
Users that are interested in biomartpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆86Aug 25, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Sep 16, 2021Updated 5 years ago
- sort genomic data☆36Nov 7, 2025Updated 10 months ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- MedSavant is a search engine for genetic variants☆22Apr 21, 2016Updated 10 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 4 months ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Aug 14, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 5 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 12 years ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 9 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Aug 22, 2026Updated last month