daler / biomartpyLinks
Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)
☆17Updated 11 years ago
Alternatives and similar repositories for biomartpy
Users that are interested in biomartpy are comparing it to the libraries listed below
Sorting:
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆70Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆14Updated 2 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Core functionality of the CGAT code☆33Updated 6 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- ☆11Updated 8 years ago
- ☆11Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- Response to blog post about Salmon☆37Updated 7 years ago