Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
☆21May 2, 2022Updated 3 years ago
Alternatives and similar repositories for seqcode
Users that are interested in seqcode are comparing it to the libraries listed below
Sorting:
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Publication quality NGS track plotting☆118Oct 10, 2025Updated 5 months ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- ☆22May 24, 2016Updated 9 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- 📊 Unipept visualisations, packaged for easy reusability☆20Feb 25, 2026Updated 3 weeks ago
- ☆13Sep 11, 2025Updated 6 months ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 2 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 12, 2026Updated last week
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Mar 14, 2026Updated last week
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- Pooled Sequencing Analysis for Sex Signal☆14Sep 14, 2021Updated 4 years ago
- HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data☆14Dec 2, 2020Updated 5 years ago
- R script to generate high resolution image of ways to balance a centrifuge☆26Feb 17, 2019Updated 7 years ago
- ☆18Jan 29, 2025Updated last year
- ☆21Jan 29, 2024Updated 2 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆25Jan 23, 2026Updated last month
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 7 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45May 15, 2025Updated 10 months ago
- Contains the xSDK community policies. The master branch is the latest accepted version of the policies and will be applied to future xSDK…☆11Jun 14, 2024Updated last year
- A web application that keeps track of real-time spread of COVID19 in India as well as across the world.☆13Jun 3, 2022Updated 3 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago