GreenleafLab / NucleoATACLinks
nucleosome calling using ATAC-seq
☆110Updated 5 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆118Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆94Updated 7 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Updated 3 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Tools for working with BUS files☆102Updated 8 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 6 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆111Updated 4 years ago
- ☆32Updated 7 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- ☆75Updated 2 years ago
- ☆120Updated 2 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago