GreenleafLab / NucleoATACLinks
nucleosome calling using ATAC-seq
☆107Updated 4 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- ☆88Updated 3 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- ☆119Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆110Updated 2 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- Tools for working with BUS files☆101Updated 4 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ☆72Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ☆31Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago