nucleosome calling using ATAC-seq
☆111Dec 20, 2020Updated 5 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 3 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 4 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆190May 1, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 6 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- IDR☆176Sep 18, 2018Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Analysis pipeline for ATAC-seq Data☆63Sep 2, 2021Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆245Mar 23, 2026Updated last month
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 3 months ago
- Fast motif matching in R☆47Jan 24, 2024Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆125Mar 23, 2020Updated 6 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆850Aug 5, 2024Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 8 months ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆127Apr 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- Tools to process and analyze deep sequencing data.☆760Jul 23, 2025Updated 9 months ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- ☆14Mar 18, 2016Updated 10 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated 2 weeks ago