GreenleafLab / NucleoATACLinks
nucleosome calling using ATAC-seq
☆108Updated 4 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below
Sorting:
- ☆90Updated 4 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A tool for bigWig files.☆118Updated 7 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- ☆120Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Tools for working with BUS files☆102Updated 5 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆32Updated 7 years ago
- ☆72Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆119Updated last month
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 3 months ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆147Updated last year