GreenleafLab / NucleoATACLinks
nucleosome calling using ATAC-seq
☆106Updated 4 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- ☆87Updated last week
- A tool for bigWig files.☆119Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆108Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- ☆30Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- ☆69Updated 2 years ago
- ☆117Updated last year
- Tools for working with BUS files☆100Updated last month
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆50Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago