nucleosome calling using ATAC-seq
☆113Dec 20, 2020Updated 5 years ago
Alternatives and similar repositories for NucleoATAC
Users that are interested in NucleoATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 8 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆88May 11, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 5 years ago
- ☆15Oct 19, 2023Updated 3 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 3 years ago
- ☆102Jun 16, 2026Updated 4 months ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- IDR☆179Sep 18, 2018Updated 8 years ago
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Nov 3, 2025Updated 11 months ago
- A tool for Read Multi-Mapper Resolution☆25Feb 15, 2017Updated 9 years ago
- ☆11May 19, 2020Updated 6 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆185Dec 18, 2021Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆259Aug 3, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- ☆10Dec 8, 2022Updated 3 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- Analysis pipeline for ATAC-seq Data☆65Sep 2, 2021Updated 5 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆789Updated this week
- Fast motif matching in R☆50Jan 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆125Mar 23, 2020Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 10 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- A cool place to store your Hi-C☆247Updated this week