Detecting sites of genomic enrichment
☆204Aug 30, 2026Updated this week
Alternatives and similar repositories for Genrich
Users that are interested in Genrich are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MACS -- Model-based Analysis of ChIP-Seq☆784Jul 7, 2026Updated last month
- Ultraperformant reimplementation of SICER☆60Dec 1, 2025Updated 9 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆254Aug 3, 2026Updated 3 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆75Dec 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ENCODE ATAC-seq pipeline☆458Jul 18, 2024Updated 2 years ago
- Application for making ENCODE Blacklists☆346Apr 23, 2021Updated 5 years ago
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 5 months ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆899Updated this week
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 4 months ago
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- IDR☆180Sep 18, 2018Updated 7 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆37Jul 5, 2021Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆195May 1, 2026Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated last month
- A (mostly) universal methylation extractor for BS-seq experiments.☆182Jun 21, 2024Updated 2 years ago
- A collection of tools for Hi-C data analysis☆652Jul 18, 2026Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆763Aug 19, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14May 12, 2023Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- ☆148Jan 7, 2019Updated 7 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- GENome Organisation Visual Analytics☆92Feb 3, 2026Updated 6 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated 2 months ago
- ☆62Mar 18, 2026Updated 5 months ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Tutorial Website☆68Feb 1, 2021Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆43Updated this week
- Fast, flexible and extensible genome browser.☆341Jun 17, 2026Updated 2 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Aug 14, 2026Updated 2 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago