Detecting sites of genomic enrichment
☆199May 8, 2023Updated 2 years ago
Alternatives and similar repositories for Genrich
Users that are interested in Genrich are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MACS -- Model-based Analysis of ChIP-Seq☆767Mar 19, 2026Updated last week
- Ultraperformant reimplementation of SICER☆59Dec 1, 2025Updated 3 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆241Mar 17, 2026Updated last week
- HMMRATAC peak caller for ATAC-seq data☆98Nov 12, 2024Updated last year
- Application for making ENCODE Blacklists☆334Apr 23, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- Fast alignment and preprocessing of chromatin profiles☆215Updated this week
- ENCODE ATAC-seq pipeline☆448Jul 18, 2024Updated last year
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆868Jul 10, 2024Updated last year
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- IDR☆175Sep 18, 2018Updated 7 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆41Mar 18, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆177Jun 21, 2024Updated last year
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14May 12, 2023Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated last year
- ☆145Jan 7, 2019Updated 7 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆269May 5, 2023Updated 2 years ago
- GENome Organisation Visual Analytics☆86Feb 3, 2026Updated last month
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆126Mar 6, 2026Updated 2 weeks ago
- ☆59Mar 18, 2026Updated last week
- Tutorial Website☆65Feb 1, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Nov 3, 2025Updated 4 months ago
- Fast, flexible and extensible genome browser.☆339Mar 19, 2026Updated last week
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆400Mar 9, 2026Updated 2 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Jan 28, 2026Updated last month