Detecting sites of genomic enrichment
☆199May 8, 2023Updated 2 years ago
Alternatives and similar repositories for Genrich
Users that are interested in Genrich are comparing it to the libraries listed below
Sorting:
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated this week
- Ultraperformant reimplementation of SICER☆59Dec 1, 2025Updated 3 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆240Dec 2, 2025Updated 3 months ago
- Application for making ENCODE Blacklists☆334Apr 23, 2021Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆97Nov 12, 2024Updated last year
- Fast alignment and preprocessing of chromatin profiles☆214Jan 17, 2026Updated last month
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- ENCODE ATAC-seq pipeline☆446Jul 18, 2024Updated last year
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated last month
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Jun 21, 2024Updated last year
- ☆59Sep 3, 2024Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated 2 months ago
- A collection of tools for Hi-C data analysis☆631Jan 31, 2026Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago
- GENome Organisation Visual Analytics☆85Feb 3, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆751Jul 23, 2025Updated 7 months ago
- ☆14May 12, 2023Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- Bedfile perturbation tool☆17Sep 29, 2025Updated 5 months ago
- ☆146Jan 7, 2019Updated 7 years ago
- Tutorial Website☆64Feb 1, 2021Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- ☆347Apr 16, 2025Updated 10 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆126Oct 3, 2025Updated 5 months ago