ParkerLab / atactk
A toolkit for working with ATAC-seq data.
☆24Updated 10 months ago
Alternatives and similar repositories for atactk:
Users that are interested in atactk are comparing it to the libraries listed below
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆16Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ATAC-seq lab for BIOINF525☆10Updated 9 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year