ParkerLab / atactkLinks
A toolkit for working with ATAC-seq data.
☆24Updated last year
Alternatives and similar repositories for atactk
Users that are interested in atactk are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- ☆17Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- ☆13Updated 8 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- chia pet analysis software☆25Updated 6 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- ATAC-seq lab for BIOINF525☆10Updated 9 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago