A toolkit for working with ATAC-seq data.
☆24Jan 22, 2026Updated 2 months ago
Alternatives and similar repositories for atactk
Users that are interested in atactk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories☆12Apr 3, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Jan 3, 2019Updated 7 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 3 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- DeepG4: A deep learning approach to predict active G-quadruplexes☆14May 31, 2022Updated 3 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- chromatin Variability Across Regions (of the genome!)☆187Jul 10, 2024Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- ☆32Jul 20, 2018Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 5 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 2 months ago
- Trends in scientific publishing delays☆11Aug 20, 2021Updated 4 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆17Jan 8, 2026Updated 3 months ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Aug 3, 2023Updated 2 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Jun 21, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- ☆55Feb 19, 2025Updated last year