biocore-ntnu / epic2
Ultraperformant reimplementation of SICER
☆56Updated 3 years ago
Alternatives and similar repositories for epic2:
Users that are interested in epic2 are comparing it to the libraries listed below
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- IDR☆31Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- ☆67Updated last year
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Tutorial Website☆57Updated 4 years ago
- BigWig and BAM utilities☆95Updated 11 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated last year
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆54Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆49Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- ☆60Updated 7 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆86Updated last week
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated last month
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year
- Links to ATAC-seq analysis tools☆63Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago