Alternatives and similar repositories for epic2

Users that are interested in epic2 are comparing it to the libraries listed below

• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆58Updated 2 years ago
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆113Updated 2 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆100Updated 7 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆91Updated last month
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆69Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• parklab / ShatterSeek
  ☆69Updated last year
• lh3 / hickit
  TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
  ☆109Updated 4 years ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• BioinfoUNIBA / REDItools2
  ☆58Updated 3 years ago
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆73Updated 11 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated 3 weeks ago
• open2c / pairtools
  Extract 3D contacts (.pairs) from sequencing alignments
  ☆113Updated this week
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆76Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆42Updated this week
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆114Updated 4 months ago
• ay-lab / fithic
  Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…
  ☆86Updated 2 years ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆81Updated 5 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 4 months ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆71Updated last year
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆60Updated last year
• Xinglab / espresso
  ☆61Updated 10 months ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 4 months ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆106Updated 4 years ago
• ParkerLab / ataqv
  A toolkit for QC and visualization of ATAC-seq results.
  ☆70Updated 5 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆48Updated 2 years ago