Ultraperformant reimplementation of SICER
☆59Dec 1, 2025Updated 5 months ago
Alternatives and similar repositories for epic2
Users that are interested in epic2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 2 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- IDR☆30Mar 30, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆12May 26, 2020Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆36Jul 5, 2021Updated 4 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated last month
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 12, 2014Updated 11 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 3 months ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆82Jan 24, 2025Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Nov 3, 2020Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 9 months ago
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 4 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Dec 8, 2020Updated 5 years ago
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated last month
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆279Nov 6, 2025Updated 6 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆774Updated this week
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago