bmvdgeijn / WASP
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
☆103Updated 3 years ago
Alternatives and similar repositories for WASP:
Users that are interested in WASP are comparing it to the libraries listed below
- Publication quality NGS track plotting☆111Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆62Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- phasing and Allele Specific Expression from RNA-seq☆111Updated 7 months ago
- Detecting sites of genomic enrichment☆190Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated this week
- A tool for bigWig files.☆119Updated 6 years ago
- ☆109Updated last year
- ☆71Updated 9 months ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 3 months ago
- A factor analysis package☆98Updated 12 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆140Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 3 weeks ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆126Updated 5 months ago