YosefLab / MPRAnalyzeLinks
Analyse enhancer strength based on MPRA experiments.
☆12Updated 4 years ago
Alternatives and similar repositories for MPRAnalyze
Users that are interested in MPRAnalyze are comparing it to the libraries listed below
Sorting:
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆34Updated 9 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Tip and tricks for VCF files☆21Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Tools for working with BUS files☆101Updated 4 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆72Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆110Updated 2 months ago
- ☆26Updated 4 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆49Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Transcript quantification import for modular pipelines☆141Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago