Analyse enhancer strength based on MPRA experiments.
☆13Nov 12, 2020Updated 5 years ago
Alternatives and similar repositories for MPRAnalyze
Users that are interested in MPRAnalyze are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆38Jun 17, 2026Updated last month
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IG…☆16Updated this week
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆11Oct 6, 2017Updated 8 years ago
- ☆34Jul 20, 2018Updated 8 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 4 months ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated last month
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆12Jul 22, 2026Updated 2 weeks ago
- ☆13Jun 17, 2023Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- Small(-ish) datasets for fun and teaching☆17Apr 5, 2016Updated 10 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆56Apr 20, 2024Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- Generate Dose-Response Curves in Python☆13May 26, 2026Updated 2 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- Kinase Activity Predictions from shotgun proteomics☆13Apr 18, 2017Updated 9 years ago
- Repo for R2D3 section at the javascript for shiny users workshop at RStudio::Conf 2020☆15Jan 28, 2020Updated 6 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆16Jun 29, 2026Updated last month
- ☆16Oct 21, 2024Updated last year
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Statistical Distributions from R☆12Apr 24, 2014Updated 12 years ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆16Updated this week
- ☆14Oct 26, 2017Updated 8 years ago
- Course on analysis of NGS data (RNA-Seq. and ATAC-Seq.) using Galaxy☆15May 24, 2021Updated 5 years ago
- Thirukural - One of the most important works in the Tamil language.☆16Feb 8, 2015Updated 11 years ago
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago