YosefLab / MPRAnalyze
Analyse enhancer strength based on MPRA experiments.
☆12Updated 4 years ago
Alternatives and similar repositories for MPRAnalyze:
Users that are interested in MPRAnalyze are comparing it to the libraries listed below
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆52Updated 3 weeks ago
- GTEx analysis scripts☆20Updated 8 years ago
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- IDR☆31Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 3 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- BAGEL software☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆23Updated 4 months ago
- ATAC-seq Quality Control☆23Updated last week
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago