yasinkaymaz / singleCellRNAseq_workshopLinks
Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
☆16Updated 6 years ago
Alternatives and similar repositories for singleCellRNAseq_workshop
Users that are interested in singleCellRNAseq_workshop are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code for EpiMap data browser☆14Updated last year
- ☆16Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Bead-based single-cell atac processing☆33Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- HOT regions paper☆11Updated 6 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- scover☆24Updated last year