yasinkaymaz / singleCellRNAseq_workshopLinks
Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
☆16Updated 6 years ago
Alternatives and similar repositories for singleCellRNAseq_workshop
Users that are interested in singleCellRNAseq_workshop are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Code for EpiMap data browser☆14Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- HOT regions paper☆11Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- ☆16Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- ☆17Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Updated 3 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆23Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago