yasinkaymaz / singleCellRNAseq_workshop
Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
☆16Updated 6 years ago
Alternatives and similar repositories for singleCellRNAseq_workshop:
Users that are interested in singleCellRNAseq_workshop are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code for EpiMap data browser☆14Updated 8 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆15Updated 2 years ago
- ☆14Updated 5 years ago
- ☆15Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- HOT regions paper☆11Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated this week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- iread☆24Updated 3 years ago
- ☆18Updated 7 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- SCASA: Single cell transcript quantification tool☆20Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated last month