yasinkaymaz / singleCellRNAseq_workshopLinks
Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
☆16Updated 6 years ago
Alternatives and similar repositories for singleCellRNAseq_workshop
Users that are interested in singleCellRNAseq_workshop are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ☆16Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Code for EpiMap data browser☆14Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Updated 3 weeks ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆14Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- pipelines to process scRNA-seq data☆12Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 3 months ago
- ☆17Updated last year
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 10 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- HOT regions paper☆11Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago