BradnerLab / pipelineLinks
bradner lab computation pipeline scripts
☆54Updated 3 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ☆33Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆22Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆34Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ATAC-seq lab for BIOINF545☆25Updated 4 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- An R package to time somatic mutations☆62Updated 4 years ago