gersteinlab / MUSICLinks
MUltiScale enrIchment Calling for ChIP-Seq Datasets
☆23Updated 6 years ago
Alternatives and similar repositories for MUSIC
Users that are interested in MUSIC are comparing it to the libraries listed below
Sorting:
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ☆21Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆12Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Q ChIP-seq peak caller☆18Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- ☆13Updated 3 weeks ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated this week
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago