gersteinlab / MUSICLinks
MUltiScale enrIchment Calling for ChIP-Seq Datasets
☆23Updated 6 years ago
Alternatives and similar repositories for MUSIC
Users that are interested in MUSIC are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- ☆12Updated 5 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Q ChIP-seq peak caller☆18Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 8 years ago