Preprocessing pipeline for (sc)ATAC data
☆10Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for proatac
Users that are interested in proatac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- Public collaboration of Scalable Single Cell Analytics☆12Nov 21, 2017Updated 8 years ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 6 years ago
- A software package for analyzing snapshots of developmental processes☆165Sep 15, 2022Updated 3 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 6 months ago
- chromatin Variability Across Regions (of the genome!)☆192May 1, 2026Updated 2 months ago
- Docker container for Illumina bcl2fastq☆13Aug 7, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- gkmSVM R package☆17Jan 15, 2018Updated 8 years ago
- ☆12Feb 14, 2022Updated 4 years ago
- an R package collection for topological data analysis☆17Apr 16, 2026Updated 3 months ago
- Python functions to compute multiparameter persistence landscapes from a RIVET file☆15Jul 13, 2024Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- ATAC-seq lab for BIOINF545☆24Feb 17, 2026Updated 5 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Use cases for anndata.☆14Jun 15, 2026Updated last month
- Coordinate job queue system, Go implementation☆29Apr 10, 2025Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆21Jun 2, 2020Updated 6 years ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- ☆65Mar 18, 2025Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 3 months ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- ☆17Jun 5, 2019Updated 7 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- Eulearning: Euler characteristic tools for topological data analysis☆17Mar 9, 2023Updated 3 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆114Nov 3, 2025Updated 8 months ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago