caleblareau / proatacLinks
Preprocessing pipeline for (sc)ATAC data
☆10Updated 3 years ago
Alternatives and similar repositories for proatac
Users that are interested in proatac are comparing it to the libraries listed below
Sorting:
- ☆28Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆75Updated 2 years ago
- ☆22Updated 6 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- ☆20Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- ☆43Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆34Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆17Updated 6 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago