Alternatives and similar repositories for SuperCRUNCH

Users that are interested in SuperCRUNCH are comparing it to the libraries listed below

• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆46Updated 9 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• TheBrownLab / PhyloFisher
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…
  ☆32Updated 2 weeks ago
• guyleonard / genomics_adventure
  Workshop on Genomics - Genomics Adventure
  ☆42Updated 2 weeks ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆88Updated last month
• marekborowiec / spruceup
  spruceup
  ☆24Updated 10 months ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆26Updated 3 weeks ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆71Updated 8 months ago
• rhysf / Synima
  Synteny Imager
  ☆63Updated 10 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• BenoitMorel / GeneRax
  ☆71Updated 3 weeks ago
• uym2 / TreeShrink
  Implementation of the TreeShrink problem
  ☆45Updated 9 months ago
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆47Updated 7 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• egluckthaler / starfish
  starfish: a modular toolkit for giant mobile element annotation
  ☆30Updated 6 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆60Updated 4 months ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆49Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 7 months ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆59Updated 7 years ago
• dportik / MonoPhylo
  A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
  ☆10Updated last year
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆54Updated 2 weeks ago