dportik / SuperCRUNCHLinks
A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.
☆41Updated last year
Alternatives and similar repositories for SuperCRUNCH
Users that are interested in SuperCRUNCH are comparing it to the libraries listed below
Sorting:
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- spruceup☆25Updated 2 weeks ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆71Updated 11 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆55Updated 2 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Automatic Assembly For The Fungi☆25Updated this week
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- Using ggtree to build phylogenetic trees☆48Updated 9 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- ☆72Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Synteny Imager☆64Updated last month
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- Workshop on Genomics - Genomics Adventure☆42Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆76Updated 10 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- An R package designed for drawing gene arrow maps☆87Updated last month
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Sydney Phylogenetics Workshop☆66Updated last month