dportik / SuperCRUNCHLinks
A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.
☆42Updated last year
Alternatives and similar repositories for SuperCRUNCH
Users that are interested in SuperCRUNCH are comparing it to the libraries listed below
Sorting:
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- spruceup☆24Updated 9 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆32Updated last week
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last month
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆68Updated 8 months ago
- ☆18Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- ☆71Updated this week
- Synteny Imager☆62Updated 9 months ago
- Implementation of the TreeShrink problem☆44Updated 8 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Workshop on Genomics - Genomics Adventure☆41Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆22Updated 11 years ago
- Hybridization detection using phylogenetic invariants☆47Updated 7 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- starfish: a modular toolkit for giant mobile element annotation☆30Updated 5 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆26Updated last week
- Tutorial about R package PopGenome☆41Updated 6 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Ancient microbiome snakemake workflow☆24Updated last month
- ☆39Updated last year