bcgsc / kollector
de novo targeted gene assembly
☆22Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for kollector
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 7 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- fastq quality assessment and filtering tool☆18Updated last year
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- ☆19Updated 11 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 8 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆15Updated 6 years ago
- ☆19Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated 5 months ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Reducing reference bias using multiple population reference genomes☆32Updated 5 months ago