Software for detecting transposable element insertions from next-generation sequencing data
☆14Mar 12, 2021Updated 5 years ago
Alternatives and similar repositories for ngs_te_mapper
Users that are interested in ngs_te_mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- ☆20Nov 15, 2020Updated 5 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- panISa is a software to search insertion sequence (IS) on resequencing data (bam file)☆24Apr 11, 2024Updated last year
- ☆10Jan 29, 2020Updated 6 years ago
- Estimate locus specific human LINE-1 expression.☆39Jan 19, 2026Updated 2 months ago
- ☆14Apr 2, 2025Updated 11 months ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆10Sep 5, 2024Updated last year
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆32Feb 24, 2026Updated last month
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Jan 26, 2026Updated last month
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- ☆11Oct 23, 2025Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆36Jul 27, 2025Updated 7 months ago
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 9 months ago
- Software for Quantifying Interspersed Repeat Expression☆66Jun 20, 2022Updated 3 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆38Aug 14, 2019Updated 6 years ago
- Template for DESeq2 Analysis of RNA-seq data☆17Mar 29, 2019Updated 6 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated last month
- Tools for processing and analyzing structural variants.☆34Sep 8, 2015Updated 10 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- ☆13Jun 5, 2024Updated last year
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- FusionAnnotator source code☆16Feb 27, 2026Updated 3 weeks ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year