bergmanlab / ngs_te_mapper
Software for detecting transposable element insertions from next-generation sequencing data
☆14Updated 3 years ago
Alternatives and similar repositories for ngs_te_mapper:
Users that are interested in ngs_te_mapper are comparing it to the libraries listed below
- A transposition caller.☆10Updated last year
- Personal diploid genome creation and coordinate conversion☆22Updated 3 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆20Updated 2 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Two pass alignment for long reads☆21Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆26Updated 4 months ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- ☆23Updated 5 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Adapters for trimming☆30Updated 5 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- ☆14Updated 7 years ago
- Human pan-genome analysis pipeline☆29Updated 4 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- Third-generation fusion gene detection☆13Updated last year