naturalis / wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
☆29Updated 3 years ago
Alternatives and similar repositories for wgs2ncbi:
Users that are interested in wgs2ncbi are comparing it to the libraries listed below
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- ☆36Updated 3 years ago
- Ancient microbiome snakemake workflow☆24Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆52Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- ☆32Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Gene-flank analysis tool☆27Updated 4 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- ☆26Updated 5 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago