naturalis / wgs2ncbiLinks
Toolkit for preparing genomes for submission to NCBI
☆29Updated 4 years ago
Alternatives and similar repositories for wgs2ncbi
Users that are interested in wgs2ncbi are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- GATB Minia assembly pipeline☆31Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Split Kmer Analysis☆66Updated 3 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- ☆37Updated 3 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆31Updated last month
- Gene-flank analysis tool☆34Updated last year
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆61Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome