jeetsukumaran / delineateLinks
Package for species delimitation analysis
☆10Updated 6 months ago
Alternatives and similar repositories for delineate
Users that are interested in delineate are comparing it to the libraries listed below
Sorting:
- Calculate Hybrid Index and Heterozygosity from SNP data☆11Updated 3 months ago
- An R function to compute Concordance Factors from SNP datasets☆14Updated 7 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆12Updated 5 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Simple and flexible manipulation of genomic data.☆16Updated 3 months ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆14Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 9 months ago
- ☆18Updated last week
- Sex assignment through coverage☆18Updated last month
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated 2 years ago
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 10 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆17Updated 5 months ago
- Analyze and simulate Pool-Seq time series data☆15Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆17Updated 4 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated last month
- Genome-wide de novo genotyping with 2bRAD☆23Updated last month
- ☆11Updated 2 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Updated 5 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated last week
- ☆14Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- Deleterious mutation prediction pipeline☆13Updated 7 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .☆8Updated 6 years ago
- ☆22Updated 11 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago