genomeannotation / GAGLinks
Generates an NCBI .tbl file of annotations on a genome.
☆68Updated 7 years ago
Alternatives and similar repositories for GAG
Users that are interested in GAG are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆63Updated 10 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- finshingTool☆54Updated 8 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- ☆44Updated 8 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last week
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- paml documentation and tutorials☆60Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- ☆63Updated last week
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- HyPhy standalone analyses☆45Updated 3 months ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 5 years ago
- Assembly statistic visualisation☆90Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year