genomeannotation / GAGLinks
Generates an NCBI .tbl file of annotations on a genome.
☆68Updated 7 years ago
Alternatives and similar repositories for GAG
Users that are interested in GAG are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆65Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- k-mer learning materials☆83Updated 11 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- ☆45Updated 9 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- ☆35Updated 5 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- HyPhy standalone analyses☆51Updated 2 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- ☆53Updated 4 years ago
- finshingTool☆54Updated 9 years ago