Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)
☆11May 3, 2024Updated last year
Alternatives and similar repositories for sowhat
Users that are interested in sowhat are comparing it to the libraries listed below
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- ☆22Mar 25, 2014Updated 11 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- An R package for manipulating phylogentic trees☆11Nov 1, 2020Updated 5 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 6 months ago
- DPPDIV☆12Apr 10, 2020Updated 5 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Feb 12, 2026Updated 2 weeks ago
- Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa☆17Jun 24, 2020Updated 5 years ago
- Phylocom R interface☆15Apr 21, 2023Updated 2 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- ☆26Updated this week
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Oct 11, 2025Updated 4 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Jan 4, 2025Updated last year
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated last month
- Blend Web App Framework☆10Updated this week
- Eugenics solution☆13May 30, 2018Updated 7 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- This is an open source version of the CADI AI software.☆11Dec 4, 2025Updated 2 months ago
- Complaint Management System is web application. It is useful for register a complaint online.☆11Jul 20, 2020Updated 5 years ago
- A flexible, pragmatic workflow tool.☆34Jun 5, 2025Updated 8 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated last week
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Mar 23, 2023Updated 2 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago