lutteropp / NetRAXLinks
Phylogenetic Network Inference without ILS
☆19Updated 3 years ago
Alternatives and similar repositories for NetRAX
Users that are interested in NetRAX are comparing it to the libraries listed below
Sorting:
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 7 months ago
- orthology assignment using phylogenetic and network analyses☆49Updated last month
- ASTRAL for PaRalogs and Orthologs☆21Updated 3 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated 2 weeks ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated last week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated last week
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- Reference genome quality scores☆21Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- transposable element typing pipeline☆19Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Sampling and inference of genealogies with recombination☆46Updated 5 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Updated 5 months ago